Accepted for Publication: June 16, 2021.
Published Online: December 23, 2021. doi:10.1001/jamaoncol.2021.5970
Corresponding Author: Soldano Ferrone, MD, PhD, Department of Surgery, Massachusetts General Hospital, Harvard Medical School, 55 Fruit St, Jackson 9, Boston, MA 02114 (sferrone@mgh.harvard.edu).
Author Contributions: Dr Ferrone had full access to all of the data in the study and takes responsibility for the integrity of the data and the accuracy of the data analysis.
Concept and design: All authors.
Acquisition, analysis, or interpretation of data: Sadagopan, Michelakos, Boyiadzis, S. Ferrone.
Drafting of the manuscript: Sadagopan, Boyiadzis, S. Ferrone.
Critical revision of the manuscript for important intellectual content: All authors.
Administrative, technical, or material support: Michelakos, Boyiadzis, S. Ferrone.
Supervision: Boyiadzis, C. Ferrone, S. Ferrone.
Conflict of Interest Disclosures: Dr S. Ferrone reported receiving research grants from Merck during the conduct of the study. No other disclosures were reported.
Funding/Support: This work was supported by grants R01DE028172, R01CA230275, R03CA219603, and R03CA253319 from the National Institutes of Health (Drs S. Ferrone and C. Ferrone) and grant W81XWH-20-1-0315 from the Department of Defense (Dr S. Ferrone).
Role of the Funder/Sponsor: The funding institutions had no role in the design and conduct of the study; collection, management, analysis, and interpretation of the data; preparation, review, or approval of the manuscript; and decision to submit the manuscript for publication.
6.Cai
L , Michelakos
T , Yamada
T ,
et al. Structural and functional defects in HLA class I antigen processing machinery in cancer cells: molecular mechanisms and clinical relevance. In: Butterfield
L , Kaufman
H , Marincola
F , eds.
Cancer Immunotherapy Principles and Practice. 2nd ed. Springer Publishing Co; 2021. doi:
10.1891/9780826137432.0005
8.Gettinger
S , Choi
J , Hastings
K ,
et al. Impaired HLA class I antigen processing and presentation as a mechanism of acquired resistance to immune checkpoint inhibitors in lung cancer.
Cancer Discov. 2017;7(12):1420-1435. doi:
10.1158/2159-8290.CD-17-0593
PubMedGoogle ScholarCrossref 11.Cathro
HP , Smolkin
ME , Theodorescu
D , Jo
VY , Ferrone
S , Frierson
HF
Jr . Relationship between HLA class I antigen processing machinery component expression and the clinicopathologic characteristics of bladder carcinomas.
Cancer Immunol Immunother. 2010;59(3):465-472. doi:
10.1007/s00262-009-0765-9PubMedGoogle ScholarCrossref 13.Mehta
AM , Jordanova
ES , Kenter
GG , Ferrone
S , Fleuren
GJ . Association of antigen processing machinery and HLA class I defects with clinicopathological outcome in cervical carcinoma.
Cancer Immunol Immunother. 2008;57(2):197-206. doi:
10.1007/s00262-007-0362-8PubMedGoogle ScholarCrossref 19.Simpson
JAD , Al-Attar
A , Watson
NFS , Scholefield
JH , Ilyas
M , Durrant
LG . Intratumoral T cell infiltration, MHC class I and STAT1 as biomarkers of good prognosis in colorectal cancer.
Gut. 2010;59(7):926-933. doi:
10.1136/gut.2009.194472PubMedGoogle ScholarCrossref 21.Watson
NFS , Ramage
JM , Madjd
Z ,
et al. Immunosurveillance is active in colorectal cancer as downregulation but not complete loss of MHC class I expression correlates with a poor prognosis.
Int J Cancer. 2006;118(1):6-10. doi:
10.1002/ijc.21303PubMedGoogle ScholarCrossref 22.Yakabe
K , Murakami
A , Nishimoto
Y , Kajimura
T , Sueoka
K , Sugino
N . Clinical implications of human leukocyte antigen class I expression in endometrial cancer.
Mol Clin Oncol. 2015;3(6):1285-1290. doi:
10.3892/mco.2015.636PubMedGoogle ScholarCrossref 25.Tanaka
K , Tsuchikawa
T , Miyamoto
M ,
et al. Down-regulation of human leukocyte antigen class I heavy chain in tumors is associated with a poor prognosis in advanced esophageal cancer patients.
Int J Oncol. 2012;40(4):965-974. doi:
10.3892/ijo.2011.1274PubMedGoogle ScholarCrossref 26.Mizukami
Y , Kono
K , Maruyama
T ,
et al. Downregulation of HLA class I molecules in the tumour is associated with a poor prognosis in patients with oesophageal squamous cell carcinoma.
Br J Cancer. 2008;99(9):1462-1467. doi:
10.1038/sj.bjc.6604715PubMedGoogle ScholarCrossref 27.Zhang
X , Lin
A , Zhang
JG ,
et al. Alteration of HLA-F and HLA I antigen expression in the tumor is associated with survival in patients with esophageal squamous cell carcinoma.
Int J Cancer. 2013;132(1):82-89. doi:
10.1002/ijc.27621PubMedGoogle ScholarCrossref 30.Wang
XK , Liao
XW , Yang
CK ,
et al. Diagnostic and prognostic biomarkers of human leukocyte antigen complex for hepatitis B virus-related hepatocellular carcinoma.
J Cancer. 2019;10(21):5173-5190. doi:
10.7150/jca.29655PubMedGoogle ScholarCrossref 31.Bandoh
N , Ogino
T , Katayama
A ,
et al. HLA class I antigen and transporter associated with antigen processing downregulation in metastatic lesions of head and neck squamous cell carcinoma as a marker of poor prognosis.
Oncol Rep. 2010;23(4):933-939. doi:
10.3892/or_00000717PubMedGoogle ScholarCrossref 32.Matsushita
H , Hasegawa
K , Oda
K ,
et al. Neoantigen load and HLA-class I expression identify a subgroup of tumors with a T-cell-inflamed phenotype and favorable prognosis in homologous recombination-proficient high-grade serous ovarian carcinoma.
J Immunother Cancer. 2020;8(1):e000375. doi:
10.1136/jitc-2019-000375PubMedGoogle Scholar 34.Ogino
T , Bandoh
N , Hayashi
T , Miyokawa
N , Harabuchi
Y , Ferrone
S . Association of tapasin and HLA class I antigen down-regulation in primary maxillary sinus squamous cell carcinoma lesions with reduced survival of patients.
Clin Cancer Res. 2003;9(11):4043-4051.
PubMedGoogle Scholar 36.Ichinokawa
K , Nakanishi
Y , Hida
Y ,
et al. Downregulated expression of human leukocyte antigen class I heavy chain is associated with poor prognosis in non-small-cell lung cancer.
Oncol Lett. 2019;18(1):117-126. doi:
10.3892/ol.2019.10293PubMedGoogle Scholar 39.Michelakos
T , Cai
L , Villani
V ,
et al. Tumor microenvironment immune response in pancreatic ductal adenocarcinoma patients treated with neoadjuvant therapy.
J Natl Cancer Inst. 2021;113(2):182-191. doi:
10.1093/jnci/djaa073PubMedGoogle ScholarCrossref 40.Djajadiningrat
RS , Horenblas
S , Heideman
DAM , Sanders
J , de Jong
J , Jordanova
ES . Classic and nonclassic HLA class I expression in penile cancer and relation to HPV status and clinical outcome.
J Urol. 2015;193(4):1245-1251. doi:
10.1016/j.juro.2014.11.057PubMedGoogle ScholarCrossref 41.Levin
I , Klein
T , Kuperman
O ,
et al. The expression of HLA class I antigen in prostate cancer in relation to tumor differentiation and patient survival.
Cancer Detect Prev. 1994;18(6):443-445.
PubMedGoogle Scholar 44.Rodig
SJ , Gusenleitner
D , Jackson
DG ,
et al. MHC proteins confer differential sensitivity to CTLA-4 and PD-1 blockade in untreated metastatic melanoma.
Sci Transl Med. 2018;10(450):eaar3342. doi:
10.1126/scitranslmed.aar3342
PubMedGoogle Scholar 45.Such
L , Zhao
F , Liu
D ,
et al. Targeting the innate immunoreceptor RIG-I overcomes melanoma-intrinsic resistance to T cell immunotherapy.
J Clin Invest. 2020;130(8):4266-4281. doi:
10.1172/JCI131572
PubMedGoogle Scholar 49.Hodge
JW , Garnett
CT , Farsaci
B ,
et al. Chemotherapy-induced immunogenic modulation of tumor cells enhances killing by cytotoxic T lymphocytes and is distinct from immunogenic cell death.
Int J Cancer. 2013;133(3):624-636. doi:
10.1002/ijc.28070
PubMedGoogle ScholarCrossref 50.Wan
S , Pestka
S , Jubin
RG , Lyu
YL , Tsai
YC , Liu
LF . Chemotherapeutics and radiation stimulate MHC class I expression through elevated interferon-beta signaling in breast cancer cells.
PLoS One. 2012;7(3):e32542. doi:
10.1371/journal.pone.0032542
PubMedGoogle Scholar 52.Peng
J , Hamanishi
J , Matsumura
N ,
et al. Chemotherapy induces programmed cell death-ligand 1 overexpression via the nuclear factor-κB to foster an immunosuppressive tumor microenvironment in ovarian cancer.
Cancer Res. 2015;75(23):5034-5045. doi:
10.1158/0008-5472.CAN-14-3098
PubMedGoogle ScholarCrossref 53.Tsuchikawa
T , Miyamoto
M , Yamamura
Y , Shichinohe
T , Hirano
S , Kondo
S . The immunological impact of neoadjuvant chemotherapy on the tumor microenvironment of esophageal squamous cell carcinoma.
Ann Surg Oncol. 2012;19(5):1713-1719. doi:
10.1245/s10434-011-1906-x
PubMedGoogle ScholarCrossref 54.Iwai
T , Sugimoto
M , Wakita
D , Yorozu
K , Kurasawa
M , Yamamoto
K . Topoisomerase I inhibitor, irinotecan, depletes regulatory T cells and up-regulates MHC class I and PD-L1 expression, resulting in a supra-additive antitumor effect when combined with anti-PD-L1 antibodies.
Oncotarget. 2018;9(59):31411-31421. doi:
10.18632/oncotarget.25830
PubMedGoogle ScholarCrossref 56.Kuo
CS , Wang
CC , Huang
YC ,
et al. Comparison of a combination of chemotherapy and immune checkpoint inhibitors and immune checkpoint inhibitors alone for the treatment of advanced and metastatic non-small cell lung cancer.
Thorac Cancer. 2019;10(5):1158-1166. doi:
10.1111/1759-7714.13057
PubMedGoogle ScholarCrossref 57.West
H , McCleod
M , Hussein
M ,
et al. Atezolizumab in combination with carboplatin plus nab-paclitaxel chemotherapy compared with chemotherapy alone as first-line treatment for metastatic non-squamous non-small-cell lung cancer (IMpower130): a multicentre, randomised, open-label, phase 3 trial.
Lancet Oncol. 2019;20(7):924-937. doi:
10.1016/S1470-2045(19)30167-6
PubMedGoogle ScholarCrossref 60.Wang
WJ , Qin
SH , Zhang
JW , Jiang
YY , Zhang
JN , Zhao
L . Combination doxorubicin and interferon-α therapy stimulates immunogenicity of murine pancreatic cancer Panc02 cells via up-regulation of NKG2D ligands and MHC class I.
Asian Pac J Cancer Prev. 2014;15(22):9667-9672. doi:
10.7314/APJCP.2014.15.22.9667
PubMedGoogle ScholarCrossref 63.Harrington
KJ , Brody
J , Ingham
M ,
et al. Preliminary results of the first-in-human (FIH) study of MK-1454, an agonist of stimulator of interferon genes (STING), as monotherapy or in combination with pembrolizumab (pembro) in patients with advanced solid tumors or lymphomas.
Ann Oncol. 2018;29:viii712. doi:
10.1093/annonc/mdy424.015Google Scholar 65.Yin
W , Song
Y , Liu
Q , Wu
Y , He
R . Topical treatment of all-trans retinoic acid inhibits murine melanoma partly by promoting CD8
+ T-cell immunity.
Immunology. 2017;152(2):287-297. doi:
10.1111/imm.12768
PubMedGoogle ScholarCrossref 68.Chesney
J , Puzanov
I , Collichio
F ,
et al. Randomized, open-label phase II study evaluating the efficacy and safety of talimogene laherparepvec in combination with ipilimumab versus ipilimumab alone in patients with advanced, unresectable melanoma.
J Clin Oncol. 2018;36(17):1658-1667. doi:
10.1200/JCO.2017.73.7379
PubMedGoogle ScholarCrossref 70.Santin
AD , Hiserodt
JC , Fruehauf
J , DiSaia
PJ , Pecorelli
S , Granger
GA . Effects of irradiation on the expression of surface antigens in human ovarian cancer.
Gynecol Oncol. 1996;60(3):468-474. doi:
10.1006/gyno.1996.0075
PubMedGoogle ScholarCrossref 71.Gameiro
SR , Jammeh
ML , Wattenberg
MM , Tsang
KY , Ferrone
S , Hodge
JW . Radiation-induced immunogenic modulation of tumor enhances antigen processing and calreticulin exposure, resulting in enhanced T-cell killing.
Oncotarget. 2014;5(2):403-416. doi:
10.18632/oncotarget.1719
PubMedGoogle ScholarCrossref 72.Gameiro
SR , Malamas
AS , Bernstein
MB ,
et al. Tumor cells surviving exposure to proton or photon radiation share a common immunogenic modulation signature, rendering them more sensitive to T cell-mediated killing.
Int J Radiat Oncol Biol Phys. 2016;95(1):120-130. doi:
10.1016/j.ijrobp.2016.02.022
PubMedGoogle ScholarCrossref 73.Jager
MJ , van der Pol
JP , de Wolff-Rouendaal
D , de Jong
PTVM , Ruiter
DJ . Decreased expression of HLA class II antigens on human uveal melanoma cells after in vivo X-ray irradiation.
Am J Ophthalmol. 1988;105(1):78-86. doi:
10.1016/0002-9394(88)90125-0
PubMedGoogle ScholarCrossref 75.Sharma
A , Bode
B , Wenger
RH ,
et al. γ-Radiation promotes immunological recognition of cancer cells through increased expression of cancer-testis antigens in vitro and in vivo.
PLoS One. 2011;6(11):e28217. doi:
10.1371/journal.pone.0028217
PubMedGoogle Scholar 76.McBride
S , Sherman
E , Tsai
CJ ,
et al. Randomized phase II trial of nivolumab with stereotactic body radiotherapy versus nivolumab alone in metastatic head and neck squamous cell carcinoma.
J Clin Oncol. 2021;39(1):30-37. doi:
10.1200/JCO.20.00290
PubMedGoogle ScholarCrossref 77.Seung
LP , Weichselbaum
RR , Toledano
A , Schreiber
K , Schreiber
H . Radiation can inhibit tumor growth indirectly while depleting circulating leukocytes.
Radiat Res. 1996;146(6):612-618. doi:
10.2307/3579376
PubMedGoogle ScholarCrossref 89.Ugurel
S , Spassova
I , Wohlfarth
J ,
et al. MHC class-I downregulation in PD-1/PD-L1 inhibitor refractory Merkel cell carcinoma and its potential reversal by histone deacetylase inhibition: a case series.
Cancer Immunol Immunother. 2019;68(6):983-990. doi:
10.1007/s00262-019-02341-9
PubMedGoogle ScholarCrossref 91.Sheahan A, Morel KL, Burkhart DL, Baca S. Targeting EZH2 increases therapeutic efficacy of check-point blockade in models of prostate cancer. Paper presented at: the AACR-NCI-EORTC International Conference on Molecular Targets and Cancer Therapeutics; October 26-30, 2019; Boston, MA. Accessed September 30, 2020. doi:
10.1158/1535-7163.TARG-19-B006
92.Gameiro
SR , Malamas
AS , Tsang
KY , Ferrone
S , Hodge
JW . Inhibitors of histone deacetylase 1 reverse the immune evasion phenotype to enhance T-cell mediated lysis of prostate and breast carcinoma cells.
Oncotarget. 2016;7(7):7390-7402. doi:
10.18632/oncotarget.7180PubMedGoogle ScholarCrossref 93.Mora-García
MdeL , Duenas-González
A , Hernández-Montes
J ,
et al. Up-regulation of HLA class-I antigen expression and antigen-specific CTL response in cervical cancer cells by the demethylating agent hydralazine and the histone deacetylase inhibitor valproic acid.
J Transl Med. 2006;4:55. doi:
10.1186/1479-5876-4-55PubMedGoogle ScholarCrossref 94.Shan
YS , Fang
JH , Lai
MD ,
et al. Establishment of an orthotopic transplantable gastric cancer animal model for studying the immunological effects of new cancer therapeutic modules.
Mol Carcinog. 2011;50(10):739-750. doi:
10.1002/mc.20668PubMedGoogle ScholarCrossref 99.Kortenhorst
MSQ , Wissing
MD , Rodríguez
R ,
et al. Analysis of the genomic response of human prostate cancer cells to histone deacetylase inhibitors.
Epigenetics. 2013;8(9):907-920. doi:
10.4161/epi.25574PubMedGoogle ScholarCrossref 101.Fonsatti
E , Nicolay
HJM , Sigalotti
L ,
et al. Functional up-regulation of human leukocyte antigen class I antigens expression by 5-aza-2′-deoxycytidine in cutaneous melanoma: immunotherapeutic implications.
Clin Cancer Res. 2007;13(11):3333-3338. doi:
10.1158/1078-0432.CCR-06-3091PubMedGoogle ScholarCrossref 105.Coral
S , Sigalotti
L , Colizzi
F ,
et al. Phenotypic and functional changes of human melanoma xenografts induced by DNA hypomethylation: immunotherapeutic implications.
J Cell Physiol. 2006;207(1):58-66. doi:
10.1002/jcp.20540PubMedGoogle ScholarCrossref 107.Serrano
A , Tanzarella
S , Lionello
I ,
et al. Repression of HLA class I antigens and restoration of antigen-specific CTL response in melanoma cells following 5-aza-2′-deoxycytidine treatment.
Int J Cancer. 2001;94(2):243-251. doi:
10.1002/ijc.1452PubMedGoogle ScholarCrossref 109.Santamaria
M , Molina
I , Muñoz
E , Lopez
A , Toro
M , Peña
J . Identification and characterization of a human cell line with dendritic cell features.
Virchows Arch B Cell Pathol Incl Mol Pathol. 1988;56(2):77-83. doi:
10.1007/BF02890005PubMedGoogle Scholar 110.Carlow
DA , Kerbel
RS , Feltis
JT , Elliott
BE . Enhanced expression of class I major histocompatibility complex gene (Dk) products on immunogenic variants of a spontaneous murine carcinoma.
J Natl Cancer Inst. 1985;75(2):291-301. doi:
10.1093/jnci/75.2.291PubMedGoogle Scholar 111.Sultan
M , Vidovic
D , Paine
AS ,
et al. Epigenetic silencing of TAP1 in aldefluor
+ breast cancer stem cells contributes to their enhanced immune evasion.
Stem Cells. 2018;36(5):641-654. doi:
10.1002/stem.2780PubMedGoogle ScholarCrossref 115.Aboud
M , Amitai
H , Huleihel
M , Har-vardi
I , Gopas
J , Segal
S . Differential transcriptional control of the H-2K and H-2D loci of the major histocompatibility complex in fibrosarcoma cells.
Immunol Invest. 1991;20(5-6):475-485. doi:
10.3109/08820139109082628PubMedGoogle ScholarCrossref 117.Natsume
A , Wakabayashi
T , Tsujimura
K ,
et al. The DNA demethylating agent 5-aza-2′-deoxycytidine activates NY-ESO-1 antigenicity in orthotopic human glioma.
Int J Cancer. 2008;122(11):2542-2553. doi:
10.1002/ijc.23407PubMedGoogle ScholarCrossref 119.Tripathi
SC , Peters
HL , Taguchi
A ,
et al. Immunoproteasome deficiency is a feature of non-small cell lung cancer with a mesenchymal phenotype and is associated with a poor outcome.
Proc Natl Acad Sci U S A. 2016;113(11):E1555-E1564. doi:
10.1073/pnas.1521812113PubMedGoogle ScholarCrossref 120.Adair
SJ , Hogan
KT . Treatment of ovarian cancer cell lines with 5-aza-2′-deoxycytidine upregulates the expression of cancer-testis antigens and class I major histocompatibility complex-encoded molecules.
Cancer Immunol Immunother. 2009;58(4):589-601. doi:
10.1007/s00262-008-0582-6PubMedGoogle ScholarCrossref 123.Watanabe
S , Hayashi
H , Haratani
K ,
et al. Mutational activation of the epidermal growth factor receptor down-regulates major histocompatibility complex class I expression via the extracellular signal-regulated kinase in non-small cell lung cancer.
Cancer Sci. 2019;110(1):52-60. doi:
10.1111/cas.13860PubMedGoogle ScholarCrossref 128.Sabbatino
F , Wang
Y , Scognamiglio
G ,
et al. Antitumor activity of BRAF inhibitor and IFNα; combination in BRAF-mutant melanoma.
J Natl Cancer Inst. 2016;108(7). doi:
10.1093/jnci/djv435
PubMedGoogle Scholar 130.Sottile
R , Pangigadde
PN , Tan
T ,
et al. HLA class I downregulation is associated with enhanced NK-cell killing of melanoma cells with acquired drug resistance to BRAF inhibitors.
Eur J Immunol. 2016;46(2):409-419. doi:
10.1002/eji.201445289PubMedGoogle ScholarCrossref 133.Sers
C , Kuner
R , Falk
CS ,
et al. Down-regulation of HLA Class I and NKG2D ligands through a concerted action of MAPK and DNA methyltransferases in colorectal cancer cells.
Int J Cancer. 2009;125(7):1626-1639. doi:
10.1002/ijc.24557PubMedGoogle ScholarCrossref 134.Angell
TE , Lechner
MG , Jang
JK , LoPresti
JS , Epstein
AL . MHC class I loss is a frequent mechanism of immune escape in papillary thyroid cancer that is reversed by interferon and selumetinib treatment in vitro.
Clin Cancer Res. 2014;20(23):6034-6044. doi:
10.1158/1078-0432.CCR-14-0879PubMedGoogle ScholarCrossref 140.Kang
SH , Keam
B , Ahn
YO ,
et al. Inhibition of MEK with trametinib enhances the efficacy of anti-PD-L1 inhibitor by regulating anti-tumor immunity in head and neck squamous cell carcinoma.
Oncoimmunology. 2018;8(1):e1515057. doi:
10.1080/2162402X.2018.1515057
PubMedGoogle Scholar 141.Gibbons
DL , Chow
LQ , Kim
DW ,
et al. Efficacy, safety and tolerability of MEDI4736 (durvalumab [D]), a human IgG1 anti-programmed cell death-ligand-1 (PD-L1) antibody, combined with gefitinib (G): a phase I expansion in TKI-naïve patients (pts) with EGFR mutant NSCLC.
J Thorac Oncol. 2016;11(4):S79. doi:
10.1016/S1556-0864(16)30171-X
Google ScholarCrossref 142.Atkins
MB , Plimack
ER , Puzanov
I ,
et al. Axitinib in combination with pembrolizumab in patients with advanced renal cell cancer: a non-randomised, open-label, dose-finding, and dose-expansion phase 1b trial.
Lancet Oncol. 2018;19(3):405-415. doi:
10.1016/S1470-2045(18)30081-0
PubMedGoogle ScholarCrossref 143.Hwu
P , Hamid
O , Gonzalez
R ,
et al Preliminary safety and clinical activity of atezolizumab combined with cobimetinib and vemurafenib in BRAF V600-mutant metastatic melanoma.
Ann Oncol. 2016;27:vi380. doi:
10.1093/annonc/mdw379.05
Google ScholarCrossref 144.Zeh
HJ , Bahary
N , Boone
BA ,
et al. A randomized phase II preoperative study of autophagy inhibition with high-dose hydroxychloroquine and gemcitabine/nab-paclitaxel in pancreatic cancer patients.
Clin Cancer Res. 2020;26(13):3126-3134. doi:
10.1158/1078-0432.CCR-19-4042
PubMedGoogle ScholarCrossref